You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 45 Next »

How to install split IMAS  using EasyBuild

This tutorial shows how to install IMAS (after repository split) using EasyBuild. The installation in this tutorial will be performed on the Gateway cluster but it can be done anywhere.

Install EasyBuild

You should install EasyBuild using Python and venv (virtual environment).

Install EasyBuild using Python
module load itm-python/3.10.13
python3 -m venv venv
module purge
source venv/bin/activate
pip3 install easybuild

You can use a different version of Python. Remember to purge all unnecessary modules that can cause conflicts with new modules created by EasyBuild.

Configuring EasyBuild

The configuration is located in the file $HOME/.config/easybuild/config.cfg. Create this file if it doesn't exist.

$HOME/.config/easybuild/config.cfg
[config]
prefix=/pfs/work/g2pbloch/imasenv_eb
modules-tool=EnvironmentModulesC
module-syntax=Tcl
[override]
insecure-download=True

Change the prefix to the path where do you want your installation.

Create a secret.txt  file in $HOME/.config/easybuild/ and paste the HTTPS ACCESS TOKEN  into ITER  repo (https://git.iter.org).

secret.txt
Authorization: Bearer <token>

Downloading configuration (EB) files

Clone these repositories and  specify the paths to them in the --robot  in the next step.

clone repo
https://gitlab.eufus.psnc.pl/g2pbloch/easybuild-files 
https://gitlab.eufus.psnc.pl/g2pbloch/easybuild-imas-files

Installation of Data Dictionary (DD)

Run the DD installation (in the easybuild-imas-files directory):

IMAS install
eb Data-Dictionary/Data-Dictionary-3.40.1-GCCcore-10.2.0.eb --allow-modules-tool-mismatch --robot=/pfs/work/g2pbloch/test_instruction/easybuild-imas-files:/pfs/work/g2pbloch/test_instruction/eb_files_repo  --http-header-fields-urlpat="^https://git.iter.org::$HOME/.config/easybuild/secret.txt"

Remember to change the --robot and pass paths to your easybuild-files  and easybuild-imas-files  directories. 

Configuring paths in IMAS configuration (EB) files

After DD installation change path in this line in the HLI easyconfigs to your  {prefix}/software/Data-Dictionary/3.40.1-GCCcore-10.2.0/dd_3.40.1/

DD path
 preconfigopts = 'export IMAS_VERSION="0.0.0" &&  export IMAS_PREFIX="/pfs/work/g2pbloch/test_instruction/software/Data-Dictionary/3.40.1-GCCcore-10.2.0/dd_3.40.1/" &&' 

In Python configuration files IMAS-AL-Python, IMAS-AL-Python-Bindings  you have to change path  to python to $prefix/software/Python/3.8.6-GCCcore-10.2.0/ 

Installation of IMAS HLIs - 5.2.0dev

IMAS
eb IMAS-AL-Cpp/IMAS-AL-Cpp-5.2.0dev-foss-2020b-DD-3.40.1.eb --allow-modules-tool-mismatch --robot=/pfs/work/g2pbloch/test_instruction/easybuild-imas-files:/pfs/work/g2pbloch/test_instruction/eb_files_repo --http-header-fields-urlpat="^https://git.iter.org::$HOME/.config/easybuild/secret.txt"
eb IMAS-AL-Fortran/IMAS-AL-Fortran-5.2.0dev-foss-2020b-DD-3.40.1.eb  --allow-modules-tool-mismatch --robot=/pfs/work/g2pbloch/test_instruction/easybuild-imas-files:/pfs/work/g2pbloch/test_instruction/eb_files_repo --http-header-fields-urlpat="^https://git.iter.org::$HOME/.config/easybuild/secret.txt" 
eb IMAS-AL-Java/IMAS-AL-Java-5.2.0dev-foss-2020b-Java-11-DD-3.40.1.eb  --allow-modules-tool-mismatch --robot=/pfs/work/g2pbloch/test_instruction/easybuild-imas-files:/pfs/work/g2pbloch/test_instruction/eb_files_repo --http-header-fields-urlpat="^https://git.iter.org::$HOME/.config/easybuild/secret.txt"   
eb IMAS-AL-Python/IMAS-AL-Python-5.2.0dev-foss-2020b-DD-3.40.1.eb  --allow-modules-tool-mismatch --robot=/pfs/work/g2pbloch/test_instruction/easybuild-imas-files:/pfs/work/g2pbloch/test_instruction/eb_files_repo --http-header-fields-urlpat="^https://git.iter.org::$HOME/.config/easybuild/secret.txt"

Remember to change the --robot and pass paths to your easybuild-files  and easybuild-imas-files  directories. 


Installation of IMAS/3.42.0-2024.08.1

  • Clone repo with easyconfigs: `https://gitlab.eufus.psnc.pl/g2pbloch/ebfiles_repo
  • Replace the paths to your python installed by easybuild in the files: /IMAS-AL-Core/IMAS-AL-Core-5.3.0-foss-2023b.eb, /IMAS-AL-Core/IMAS-AL-Core-5.3.0-intel-2023b.eb ,  /IMAS-AL-Python/IMAS-AL-Python-5.3.0-foss-2023b-DD-3.42.0.eb ,`/IMAS-AL-Python/IMAS-AL-Python-5.3.0-intel-2023b-DD-3.42.0.eb`
  •  Run installation: 
    eb ./ebfiles_repo/IMAS/IMAS-3.42.0-2024.08.1-foss-2023b.eb --allow-modules-tool-mismatch --robot=<path_to_ebfiles_repo> --http-header-fields-urlpat=^https://git.iter.org::/afs/eufus.eu/user/g/g2pbloch/.config/easybuild/secret.txt --accept-eula-for=Intel-oneAPI
eb ./ebfiles_repo/IMAS/IMAS-3.42.0-2024.08.1-intel-2023b.eb --allow-modules-tool-mismatch --robot=<path_to_ebfiles_repo> --http-header-fields-urlpat=^https://git.iter.org::/afs/eufus.eu/user/g/g2pbloch/.config/easybuild/secret.txt --accept-eula-for=Intel-oneAPI




How to use IMAS

After installation you can load IMAS  modules i.e:

Load module
module use {prefix}/modules/all
module load IMAS-AL-Cpp/5.2.0dev-foss-2020b-DD-3.40.1
module load IMAS-AL-Fortran/5.2.0dev-foss-2020b-DD-3.40.1
module load IMAS-AL-Java/5.2.0dev-foss-2020b-Java-11-DD-3.40.1
module load IMAS-AL-Python/5.2.0dev-foss-2020b-DD-3.40.1

How it works

  • eb - EasyBuild

  • IMAS-AL-Cpp/IMAS-AL-Cpp-5.2.0dev-foss-2020b-DD-3.40.1.eb - path to EasyBuild configuration file

  • --allow-modules-tool-mismatch - flag
  • --robot - paths to configuration files
  • --http-header-fields-urlpat - secret to downloading files from ITER repo

Useful tips

  • If you have compilation problems try adding the --parallel=1  option
  • If you have problem with Perl : 
    make[1]: Entering directory `/afs/gw/swimas/easybuild/opt/build/Perl/5.38.0/GCCcore-13.2.0/perl-5.38.0/utils'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/afs/gw/swimas/easybuild/opt/build/Perl/5.38.0/GCCcore-13.2.0/perl-5.38.0/utils'

        Everything is up to date. Type 'make test' to run test suite.
./perl -Ilib -I. installperl --destdir=
mkdir /afs/.gw: Read-only file system at ./install_lib.pl line 146.
make: *** [install-all] Error 30
 (at easybuild/tools/run.py:682 in parse_cmd_output)
    The reason may be the installation path starting with /afs . Try changing it.
  • If you have problem with cairo  and old ttx you can link old ttx  to /usr/bin/true .
  • Problem with IMAS modules → change 
  • No labels

The scientific work is published for the realization of the international project co-financed by Polish Ministry of Science and Higher Education in 2019 from financial resources of the program entitled "PMW"; Agreement No. 5040/H2020/Euratom/2019/2.

This work has been carried out within the framework of the EUROfusion Consortium and has received funding from the Euratom research and training programme 2014–2020 under grant agreement No 633053.

This work has been carried out within the framework of the EUROfusion Consortium, funded by the European Union via the Euratom Research and Training Programme (Grant Agreement No. 101052200-EUROfusion). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Commission. Neither the European Union nor the European Commission can be held responsible for them.

The project activities are co-financed by Polish Ministry of Science and Higher Education from financial resources of the programme entitled "PMW" in 2023, 2024.

The views and opinions expressed herein do not necessarily reflect those of the European Commission or ITER